| Nobre, A. M., Ferreira, J. G., Nunes, J. P., Yan, X., Bricker, S., Corner, R., Groom, S., Gu, H., Hawkins, A., Hutson, R., Lan, D., Lencart e Silva, J. D., Pascoe, P., Telfer, T., Zhang, X., Zhu, M., 2010. Assessment of coastal management options by means of multilayered ecosystem models. Estuarine, Coastal and Shelf Science, 87, 43-62. |
| A.M. Nobre, J.K. Musango, M.P. de Wit, J.G. Ferreira, 2009. A dynamic ecological-economic modeling approach for aquaculture management. Ecological Economics, 68, 3007-3017. |
| A.M. Nobre, J.G. Ferreira, 2009. Integration of ecosystem-based tools to support coastal zone management. Journal of Coastal Research, SI 56: 1676-1680. |
| J.G. Ferreira, A. Sequeira, A.J.S. Hawkins, A. Newton, T. Nickell, R. Pastres, J. Forte, A. Bodoy, S.B. Bricker, 2009. Analysis of coastal and offshore aquaculture: application of the FARM model to multiple systems and shellfish species. Aquaculture, 292, 129-138. |
| Borja, A., Bricker, S.B., Dauer, D.M., Demetriades, N.T., Ferreira, J.G., Forbes, A.T., Hutchings, P., Jia, X., Kenchington, R., Marques, J.C., Zhu, C.B. 2008. Overview of integrative tools and methods in assessing ecological integrity in estuarine and coastal systems worldwide. Marine Pollution Bulletin, 56, 1519–1537. |
| J.G. Ferreira, A.J.S. Hawkins, P. Monteiro, H. Moore, M. Service, P.L. Pascoe, L. Ramos, A. Sequeira, 2008. Integrated Assessment of Ecosystem-Scale Carrying Capacity in Shellfish Growing Areas. Aquaculture, 275, 138-151. |
| A. Sequeira, J.G. Ferreira, A.J. Hawkins, A. Nobre, P. Lourenço, X.L. Zhang, X. Yan, T. Nickell, 2008. Trade-offs between shellfish aquaculture and benthic biodiversity: A modelling approach for sustainable management. Aquaculture, 274, 313-328. |
| J. G. Ferreira, C. Vale, C.V. Soares, F.Salas, P.E. Stacey, S. B. Bricker, M.C. Silva, J.C. Marques, 2007. Monitoring of coastal and transitional waters under the EU Water Framework Directive. Environmental Monitoring and Assessment, 135 (1-3), 195-216 . |
| Martins, I., Lopes, R.J., Lillebø, A.I., Neto, J.M., Pardal, M.A., Ferreira, J.G., Marques, J.C., 2007. Significant variations in the productivity of green macroalgae in a mesotidal estuary: implications to the nutrient loading of the system and the adjacent coastal area. Marine Pollution Bulletin, 54 (6), 678-690 . |
| Xiao, Y., Ferreira, J.G., Bricker, S.B., Nunes, J.P., Zhu, M., Zhang X., 2007. Trophic Assessment in Chinese Coastal Systems - Review of methodologies and application to the Changjiang (Yangtze) Estuary and Jiaozhou Bay. Estuaries and Coasts, 30(6), 1-18. |
| D. Whitall, S.B.Bricker, J.G.Ferreira, A.M.Nobre, T. Simas, M.C. Silva, 2007. Assessment of Eutrophication in Estuaries: Pressure-State-Response and Nitrogen Source Apportionment. Environmental Management,.40:678-690. |
| T.C. Simas, J.G. Ferreira, 2007. Nutrient enrichment and the role of salt marshes in the Tagus estuary (Portugal). Estuarine, Coastal and Shelf Science, 75, 393-407. |
| J. G. Ferreira, A.J.S. Hawkins, S.B. Bricker, 2007. Management of productivity, environmental effects and profitability of shellfish aquaculture – the Farm Aquaculture Resource Management (FARM) model. Aquaculture, 264, 160-174. |
| J.G. Ferreira, S.B. Bricker, T.C. Simas, 2007. Application and sensitivity testing of an eutrophication assessment method on coastal systems in the United States and European Union. J. Environmental Management, 82, 433-445. |
| A. R. Franco, J. G. Ferreira, A. M. Nobre, 2006. Development of a growth model for penaeid shrimp. Aquaculture, 259, 268-277. |
| J. G. Ferreira, A. M. Nobre, T. C. Simas, M. C. Silva, A. Newton, S. B. Bricker, W. J. Wolff, P.E. Stacey, A. Sequeira, 2006. A methodology for defining homogeneous water bodies in estuaries – Application to the transitional systems of the EU Water Framework Directive. Estuarine, Coastal and Shelf Science, 66 (3/4), 468-482. |
| J.G.Ferreira, W.J.Wolff, T.C.Simas, S.B.Bricker, 2005. Does biodiversity of estuarine phytoplankton depend on hydrology? Ecological Modelling, 187(4) 513-523. |
| A.M.Nobre, J.G.Ferreira, A.Newton, T.Simas, J.D.Icely, R.Neves, 2005. Management of coastal eutrophication: Integration of field data, ecosystem-scale simulations and screening models. Journal of Marine Systems, 56 (3/4), 375-390. |
| Tett, P., Gilpin, L., Svendsen, H., Erlandsson, C.P., Larsson, U., Kratzer, S., Fouilland, E., Janzen, C., Lee, J., Grenz, C., Newton, A., Ferreira, J.G., Fernandes, T., Scory, S., 2003. Eutrophication and some European waters of restricted exchange. Continental Shelf Research, 23, 1635-1671. |
| Bricker, S.B., J.G. Ferreira, T. Simas, 2003. An Integrated Methodology for Assessment of Estuarine Trophic Status. Ecological Modelling, 169(1), 39-60. |
| Alvera-Azcarate, A., Ferreira, J.G., & Nunes, J.P., 2003. Modelling eutrophication in mesotidal and macrotidal estuaries. The role of intertidal seaweeds. Estuarine, Coastal and Shelf Science, 57(4), 715-724. |
| Nunes, J.P, Ferreira, J.G., Gazeau, F., Lencart-Silva, J., Zhang, X.L, Zhu M.Y. & Fang J.G., 2003. A model for sustainable management of shellfish polyculture in coastal bays. Aquaculture, 219/1-4, 257-277. |
| Older publications |
| Simas, T., Nunes, J.P. & Ferreira, J.G., 2001. Effects of global climate change on coastal salt marshes. Ecological Modelling. 139 (1), 1-15. |
| Ferreira, J.G., 2000. Development of an estuarine quality index based on key physical and biogeochemical features. Ocean & Coastal Management, 43/1, 99-122. |
| Macedo, M.F., Ferreira, J.G. and Duarte, P., 1998. Dynamic behaviour of photosynthesis-irradiance curves determined from oxygen production during variable incubation periods. Mar. Ecol. Prog. Series, 165, 31-43. |
| Ferreira, J.G., Duarte, P. and Ball, B., 1998. Trophic Capacity of Carlingford Lough for Aquaculture - Analysis by Ecological Modelling. Aquatic Ecology Vol. 31, 4, 361-378. |
| Duarte, P. & Ferreira, J.G., 1997. Dynamic modelling of photosynthesis in marine and estuarine ecosystems. Environmental Modelling and Assessment, 2, 83-93. |
| Ferreira, J.G., 1995. EcoWin - An object-oriented ecological model for aquatic ecosystems. Ecol. Modelling, 79, 21-34. |